Stem-loop ath-MIR2933b

Accession

MI0013363

Description

Arabidopsis thaliana ath-MIR2933b precursor miRNA MIR2933

Gene
family

RF03984; MIR2933

Literature search

1 open access papers mention ath-MIR2933b
(1 sentences)

Sequence

36479 reads, 255.0 reads per million, 183 experiments

gaaauucguuggcgauuuugagugaaAUCGGAGAGGGAAUUCGUCGGugauuuugaguGAAAUCGGAGAGGAAAUUCGCCggcgauuuugagugaaaucggagaggaaaauc
....(((.((..((((((((...(((((((..(.(.((((((.((..(((((((....)))))))..)).).))))).))..)))))))...))))))))..)).)))....

Structure

gaaa   g  gg        agu       GA A G     - G  GG       g 
    uuc uu  cgauuuug   gaaAUCG  G G GAAUU C UC  ugauuuu a
    ||| ||  ||||||||   |||||||  | | ||||| | ||  |||||||  
    aag ag  gcuaaagu   uuuuagc  C C CUUAA G AG  GCUAAAG g
cuaa   g  ag        gag       gg - G     A G  AG       u 

Annotation confidence Low

Genome context

chr3: 17402762-17402873 [-]

Mature ath-miR2933b-5p

• Accession: MIMAT0053892
• Description: Arabidopsis thaliana ath-miR2933b-5p mature miRNA
• Sequence: 27 - AUCGGAGAGGGAAUUCGUCGG - 47
• Evidence: experimental ; unknown

Mature ath-miR2933b-3p

• Accession: MIMAT0014137
• Description: Arabidopsis thaliana ath-miR2933b-3p mature miRNA
• Sequence: 59 - GAAAUCGGAGAGGAAAUUCGCC - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20042113
   MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana
   Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H
   BMC Genomics (2009) 10:643