Stem-loop ath-MIR2937

Accession

MI0013367

Description

Arabidopsis thaliana ath-MIR2937 precursor miRNA

Literature search

1 open access papers mention ath-MIR2937
(1 sentences)

Sequence

3684 reads, 28.0 reads per million, 108 experiments

cauuuuccguuaguaaccuauuggccauUUGAUAACUCCAACAAGGACUaaucaaacgagaaccauuugaugauguuaauggugaaacacaagacccaucagcaaacucuccuccaauggucacaccacuacaaaacauuagauccuuuaaugacuccaacaaaacucuuaugaugugggugcuagugaggccaguaccguaguuaauauugauguguuuuuggucugacugucuacaaaagaaauccacaucAUAAGAGCUGUUGAAGGAGUCauuaaaagaucuaaugguuugaucauuagaggaggguuuguugaugggucguguguugcaucauuaauaucaucaaaugguucucguuuaauucguauuuguuguagucaucaaauagccaauauguuacgcuauguaccacgaaaaug
((((((((((..(((((.(((((((.(((((((.(((.(((((((.((.(((.(((((((((((((((((((((((((((((((.((((((.((((((((((((((((((((((.((((((((.((((..........(((((((.((((((((((((((((...((((((((((((((((..((((.(((((((.((((((((....))).))).))..))))))).))))(((.....))).)))))))))))))))).))))...)))))))))))).))))))))))).)))))))).)))))))))))))))))))))).)))))).))))))))))))))))))))))))))))))).))).)).))))))).))).))))))).))))))).)))))...)))......)))))))

Structure

       ------   -ua     c       c       A   C       G  U   c                               a      a                      c        c    cuacaaaaca       c            ---    aaa                ----------gc    g       -u  -   -   u 
cauuuuc      cgu   guaac uauuggc auUUGAU ACU CAACAAG AC aau aaacgagaaccauuugaugauguuaauggug aacaca gacccaucagcaaacucuccuc aaugguca acca          uuagauc uuuaaugacucc   aaca   cucuuaugaugugggu            uagu aggccag  ac cgu agu a
|||||||      |||   ||||| ||||||| ||||||| ||| ||||||| || ||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||          ||||||| ||||||||||||   ||||   ||||||||||||||||            |||| |||||||  || ||| |||  
guaaaag      gua   cauug auaaccg uaaacua uga guuguuu ug uua uuugcucuugguaaacuacuauaauuacuac uugugu cuggguaguuguuugggaggag uuacuagu uggu          aaucuag aaauuaCUGAGG   UUGU   GAGAAUAcuacaccua            guca ucugguu  ug gua uua a
       caccau   ucg     u       a       c   u       a  c   a                               g      g                      a        u    ----------       a            AAG    --C                aagaaaacaucu    g       uu  u   g   u 

Annotation confidence Low

Genome context

chr5: 13622416-13622838 [+]

Mature ath-miR2937-5p

• Accession: MIMAT0053894
• Description: Arabidopsis thaliana ath-miR2937-5p mature miRNA
• Sequence: 29 - UUGAUAACUCCAACAAGGACU - 49
• Evidence: experimental ; unknown

Mature ath-miR2937-3p

• Accession: MIMAT0014141
• Description: Arabidopsis thaliana ath-miR2937-3p mature miRNA
• Sequence: 254 - AUAAGAGCUGUUGAAGGAGUC - 274
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20042113
   MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana
   Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H
   BMC Genomics (2009) 10:643