miRBase entry: rco-MIR159

Stem-loop rco-MIR159


Accession
MI0013378
Description
Ricinus communis rco-MIR159 precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
2 open access papers mention rco-MIR159
(4 sentences)

Sequence

gaguggagcuccuugaaguccaauagaggaucuugauggguagauugagcugcugagcuauggaucccacagcccuauaagcagagauuauaauuuuggauaggcuuguggcuugcauaucucaggagcuucauuaccuuguauuagauccuugUUUGGAUUGAAGGGAGCUCUAcaucu
((((((((((((((..(((((((..((((((((....((((((...(((((.(((((.((((.(..((((((.(((((...(((((.......))))).))))).))))))..).)))).))))).)))))..))))))......))))))))..)))))))..)))))))))))).)).

Structure
-  -            ga       ua        --ugau      auu     g     c    g uc      c     aag     au 
 ga guggagcuccuu  aguccaa  gaggaucu      ggguag   gagcu cugag uaug a  ccacag ccuau   cagag  u
 || ||||||||||||  |||||||  ||||||||      ||||||   ||||| ||||| |||| |  |||||| |||||   |||||  a
 cu cAUCUCGAGGGA  UUAGGUU  uuccuaga      uccauu   uucga gacuc auac u  gguguu ggaua   guuuu  u
u  a            AG       Ug        uuaugu      -ac     g     u    g uc      c     --g     aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
EQ974757.1: 35526-35705 [-]

Database links

Mature rco-miR159

Accession MIMAT0014152
Description Ricinus communis rco-miR159 mature miRNA
Sequence 155 - UUUGGAUUGAAGGGAGCUCUA - 175
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995