miRBase entry: rco-MIR166e

Stem-loop rco-MIR166e


Accession
MI0013390
Description
Ricinus communis rco-MIR166e precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
2 open access papers mention rco-MIR166e
(5 sentences)

Sequence

ugaggggaauguugucuggcucgaggacucucuuuugaucccuuucaauuuucuccauagauccaauacggauauugggaguggguagaucauuugacagugucgUCGGACCAGGCUUCAUUCCCCccaau
((.((((((((..((((((.((((.(((.((.((.(((((...((((.....((((....((((.....))))....))))))))..)))))...)).)).))).)))).))))))..)))))))).))..

Structure
--  a        uu      c    g   u  c  --u     ccu    auuuu    auag    a 
  ug ggggaaug  gucugg ucga gac cu uu   ugauc   uuca     cucc    aucc a
  || ||||||||  |||||| |||| ||| || ||   |||||   ||||     ||||    |||| u
  ac CCCCUUAC  CGGACC GGCU cug ga ag   acuag   gggu     gagg    uagg a
ua  c        UU      A    g   u  c  uuu     -au    -----    guua    c 


Annotation confidence Not enough data
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Genome context
EQ974167.1: 24073-24203 [+]

Database links

Mature rco-miR166e

Accession MIMAT0014164
Description Ricinus communis rco-miR166e mature miRNA
Sequence 106 - UCGGACCAGGCUUCAUUCCCC - 126
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995