Stem-loop aae-mir-2946

Accession

MI0013532

Description

Aedes aegypti aae-mir-2946 precursor miRNA

Literature search

2 open access papers mention aae-mir-2946
(9 sentences)

Sequence

175961 reads, 1361.0 reads per million, 75 experiments

uaugaacaaugaucGCCAUAUUUUUACCGCUACUGCAUuucauuguaauaauugUAGUACGGAAAAGAUAUGGGGAuugggguucaua
(((((((..(((((.((((((((((.(((.(((((((...............)))))))))).)))))))))).)))))..)))))))

Structure

       aa     G          A   C       Uuucau 
uaugaac  ugauc CCAUAUUUUU CCG UACUGCA      u
|||||||  ||||| |||||||||| ||| |||||||      g
auacuug  guuAG GGUAUAGAAA GGC AUGAUgu      u
       gg     G          A   -       uaauaa 

Annotation confidence High

Genome context

ref|NW_001811113.1|: 413565-413652 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aae-mir-2946

Mature aae-miR-2946-5p

• Accession: MIMAT0057368
• Description: Aedes aegypti aae-miR-2946-5p mature miRNA
• Sequence: 15 - GCCAUAUUUUUACCGCUACUGCAU - 38
• Evidence: experimental ; 454 [1]

Mature aae-miR-2946-3p

• Accession: MIMAT0014325
• Description: Aedes aegypti aae-miR-2946-3p mature miRNA
• Sequence: 55 - UAGUACGGAAAAGAUAUGGGGA - 76
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581