Stem-loop bmo-mir-1000

Accession

MI0013533

Description

Bombyx mori bmo-mir-1000 precursor miRNA

Literature search

2 open access papers mention bmo-mir-1000
(2 sentences)

Sequence

8254 reads, 172.0 reads per million, 24 experiments

ggcgcgucgcggccAUAUUGUCCUGUCACAGCAGUacuuggaagcuaCUGCUGCGUCUGGACAAGCCGGccgcggcgccgcc
((((((((((((((...((((((.(.(.((((((((((....)).)))))))).).).))))))...)))))))))).))))

Structure

    -          AUA      U U A        -  u 
ggcg cgucgcggcc   UUGUCC G C CAGCAGUa cu g
|||| ||||||||||   |||||| | | |||||||| ||  
ccgc gcggcgccGG   AACAGG C G GUCGUCau ga g
    c          CCG      U U C        c  a 

Annotation confidence High

Genome context

dbj|BSVE01000024.1|: 9635165-9635246 [-]

Mature bmo-miR-1000-5p

• Accession: MIMAT0014326
• Description: Bombyx mori bmo-miR-1000-5p mature miRNA
• Sequence: 15 - AUAUUGUCCUGUCACAGCAGU - 35
• Evidence: experimental ; RTPCR [1], SOLID [2]

Mature bmo-miR-1000-3p

• Accession: MIMAT0053215
• Description: Bombyx mori bmo-miR-1000-3p mature miRNA
• Sequence: 48 - CUGCUGCGUCUGGACAAGCCGG - 69
• Evidence: experimental ; RTPCR [1], SOLID [2]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415


2. PubMed ID: 19823945
   Computational identification and characteristics of novel microRNAs from the silkworm (Bombyx mori L.)
   "Huang Y, Zou Q, Tang SM, Wang LG, Shen XJ"
   "Mol Biol Rep (2010) 37:3171-3176