Stem-loop ghr-MIR482b

Accession

MI0013547

Description

Gossypium hirsutum ghr-MIR482b precursor miRNA

Literature search

20 open access papers mention ghr-MIR482b
(150 sentences)

Sequence

75589 reads, 4295.0 reads per million, 51 experiments

agagacgauggagaaggagcuuaggauucuagaaagcucguggGAUGGGUGAGGGGGUAAGACAauggacuguuucagucuuuuggaaacagaaauaaagaagaaggcugguuuaugUCUUGCCUACUCCACCCAUGCCacugguuuccugguguuccuccuccuccuaaagucucu
((((((...((((.(((((....((((.((((.(((((.((((.(((((((((.((((((((((.(((((.....(((((((((.................)))))))))))))))))))))))).)).))))))).)))).))))).)))).))))))))).))))....))))))

Structure

      -gau    a     cuua    u    a     c    G       -  G          a     uguuu         ggaaaca 
agagac    ggag aggag    ggau cuag aagcu gugg AUGGGUG AG GGGUAAGACA uggac     cagucuuuu       g
||||||    |||| |||||    |||| |||| ||||| |||| ||||||| || |||||||||| |||||     |||||||||       a
ucucug    ccuc uccuc    cuug gguc uuugg caCC UACCCAC UC UCCGUUCUgu auuug     gucggaaga       a
      aaau    c     ----    u    c     u    G       C  A          -     -----         agaaaua 

Annotation confidence Medium

Genome context

Unknown

Mature ghr-miR482b-5p

• Accession: MIMAT0055302
• Description: Gossypium hirsutum ghr-miR482b-5p mature miRNA
• Sequence: 44 - GAUGGGUGAGGGGGUAAGACA - 64
• Evidence: experimental ; unknown

Mature ghr-miR482b-3p

• Accession: MIMAT0014340
• Description: Gossypium hirsutum ghr-miR482b-3p mature miRNA
• Sequence: 118 - UCUUGCCUACUCCACCCAUGCC - 139
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122