Stem-loop cel-mir-2953

Accession

MI0013633

Description

Caenorhabditis elegans cel-mir-2953 precursor miRNA

Sequence

2523 reads, 10.0 reads per million, 69 experiments

UACAGAAGUGUUCGUGAAAAUAAAuauguguuuuuuuuaUGAUCACUAGCUCUUCUGUAGC
((((((((.(((.((((..(((((...........)))))..)))).))).))))))))..

Structure

--        U   C    AA     uaug 
  UACAGAAG GUU GUGA  AUAAA    u
  |||||||| ||| ||||  |||||    g
  AUGUCUUC CGA CACU  Uauuu    u
CG        U   U    AG     uuuu 

Annotation confidence High

Genome context

chrII: 6747182-6747242 [+]

Mature cel-miR-2953-5p

• Accession: MIMAT0014446
• Description: Caenorhabditis elegans cel-miR-2953-5p mature miRNA
• Sequence: 1 - UACAGAAGUGUUCGUGAAAAUAAA - 24
• Evidence: experimental ; CLIPseq [1], Illumina [2]

Mature cel-miR-2953-3p

• Accession: MIMAT0014447
• Description: Caenorhabditis elegans cel-miR-2953-3p mature miRNA
• Sequence: 40 - UGAUCACUAGCUCUUCUGUAGC - 61
• Evidence: experimental ; CLIPseq [1], Illumina [2]

References

1. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179


2. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577