Stem-loop gga-mir-2954

Accession

MI0013634

Description

Gallus gallus gga-mir-2954 precursor miRNA mir-2954

Gene
family

RF03446; mir-2954

Literature search

9 open access papers mention gga-mir-2954
(49 sentences)

Sequence

7010395 reads, 6917.0 reads per million, 255 experiments

CUGAGAGGGCUUGGGGAGAGGAUUGuaguggagcucCAUCCCCAUUCCACUCCUAGCAGcucucuggc
.(.((((((((..(((((.(((.((..((((....))))...)).))).)))))...)))))))).).

Structure

C G        -UG     A   U  -ua    a 
 U AGAGGGCU   GGGAG GGA UG   gugg g
 | ||||||||   ||||| ||| ||   ||||  
 g ucucucGA   UCCUC CCU AC   UACc c
c g        CGA     A   U  CCC    u 

Annotation confidence Medium

Genome context

Z: 71305174-71305241 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-2954

Mature gga-miR-2954-5p

• Accession: MIMAT0051274
• Description: Gallus gallus gga-miR-2954-5p mature miRNA
• Sequence: 1 - CUGAGAGGGCUUGGGGAGAGGAUUG - 25
• Evidence: experimental ; Northern [1]

Mature gga-miR-2954-3p

• Accession: MIMAT0014448
• Description: Gallus gallus gga-miR-2954-3p mature miRNA
• Sequence: 37 - CAUCCCCAUUCCACUCCUAGCAG - 59
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 20220842
   Somatic sex identity is cell autonomous in the chicken
   "Zhao D, McBride D, Nandi S, McQueen HA, McGrew MJ, Hocking PM, Lewis PD, Sang HM, Clinton M"
   "Nature (2010) 464:237-242