Stem-loop tgu-mir-2955

Accession

MI0013636

Description

Taeniopygia guttata tgu-mir-2955 precursor miRNA

Literature search

0 open access papers mention tgu-mir-2955
(0 sentences)

Sequence

gugcgaguacuuccagcugcuuuagugcaAAGUCCAACAGCUUAGCCUGAauagucuucucugacagcuccagcUAAGCUUCUGGACUUUGCAUCaaaguggcugugcacucacau
(((.((((.(...((((((((((.((((((((((((..((((((((..((...(((......)))...))..))))))))..)))))))))))).)))))))))).).)))).)))

Structure

   c    a uuc          a            AC        CU  aua   uu 
gug gagu c   cagcugcuuu gugcaAAGUCCA  AGCUUAGC  GA   guc  c
||| |||| |   |||||||||| ||||||||||||  ||||||||  ||   |||   
uac cuca g   gucggugaaa UACGUUUCAGGU  UCGAAUcg  cu   cag  u
   a    c --u          C            CU        ac  cga   uc 

Annotation confidence Not enough data

Genome context

chr1A: 57982665-57982780 [-]

Mature tgu-miR-2955-3p

• Accession: MIMAT0014450
• Description: Taeniopygia guttata tgu-miR-2955-3p mature miRNA
• Sequence: 75 - UAAGCUUCUGGACUUUGCAUC - 95
• Evidence: experimental ; Illumina [1-2]

Mature tgu-miR-2955-5p

• Accession: MIMAT0026957
• Description: Taeniopygia guttata tgu-miR-2955-5p mature miRNA
• Sequence: 30 - AAGUCCAACAGCUUAGCCUGA - 50
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727