Stem-loop tgu-mir-148b

Accession

MI0013642

Description

Taeniopygia guttata tgu-mir-148b precursor miRNA

Sequence

ccggagacaaaguucuguagugcacugacugcuaucguacccagagUCGGAGUGUCACAGAACUUUGCuuccgg
((((((.(((((((((((...(((((((((..............))))..))))).))))))))))).))))))

Structure

      a           agu     --    gcuauc 
ccggag caaaguucugu   gcacu  gacu      g
|||||| |||||||||||   |||||  ||||       
ggccuu GUUUCAAGACA   UGUGA  CUga      u
      C           --C     GG    gaccca 

Annotation confidence Not enough data

Genome context

chr2: 52006667-52006740 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-148b

Mature tgu-miR-148b

• Accession: MIMAT0014455
• Description: Taeniopygia guttata tgu-miR-148b mature miRNA
• Sequence: 47 - UCGGAGUGUCACAGAACUUUGC - 68
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762