miRBase entry: tgu-mir-148b

Stem-loop tgu-mir-148b

Accession

MI0013642

Description

Taeniopygia guttata tgu-mir-148b precursor miRNA

Gene family

MIPF0001027; mir-2957

Sequence

ccggagacaaaguucuguagugcacugacugcuaucguacccagagUCGGAGUGUCACAGAACUUUGCuuccgg
((((((.(((((((((((...(((((((((..............))))..))))).))))))))))).))))))

Structure

      a           agu     --    gcuauc 
ccggag caaaguucugu   gcacu  gacu      g
|||||| |||||||||||   |||||  ||||       
ggccuu GUUUCAAGACA   UGUGA  CUga      u
      C           --C     GG    gaccca

Annotation confidence Not enough data

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Genome context

chr2: 52006667-52006740 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-148b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tgu-miR-148b

Accession	MIMAT0014455
Description	Taeniopygia guttata tgu-miR-148b mature miRNA
Sequence	47 - UCGGAGUGUCACAGAACUUUGC - 68
Evidence	experimental 454 [1], Illumina [1]

References

PubMed ID: 20360741
The genome of a songbird
"Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
"Nature (2010) 464:757-762