Stem-loop tgu-mir-2958

Accession

MI0013643

Description

Taeniopygia guttata tgu-mir-2958 precursor miRNA

Sequence

gggagccuggcuggagccugaUGCUGGUGUAGAUGUGUCACAGUgcauccccaguggccacucuggcaccaacaccaguuuuggccccagucccugcuccc
((((((..((((((.(((....((((((((....((((((.((((...((.....)).)))).))))))..))))))))...))).)))).))..))))))

Structure

      cu  -    a   ugaU        AGAU      C    cau  c 
gggagc  gg cugg gcc    GCUGGUGU    GUGUCA AGUg   cc c
||||||  || |||| |||    ||||||||    |||||| ||||   || a
cccucg  cc gacc cgg    ugaccaca    cacggu ucac   gg g
      uc  u    c   -uuu        --ac      c    --c  u 

Annotation confidence Not enough data

Genome context

chr21: 2262481-2262581 [-]

Mature tgu-miR-2958

• Accession: MIMAT0014456
• Description: Taeniopygia guttata tgu-miR-2958 mature miRNA
• Sequence: 22 - UGCUGGUGUAGAUGUGUCACAGU - 44
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727