Stem-loop tgu-mir-1784

Accession

MI0013644

Description

Taeniopygia guttata tgu-mir-1784 precursor miRNA

Sequence

ugauuucuuggggcccaaUUCUGCUCUUAUUGAAAUCAGUgagaguccugccauUGACUUAAAUGGGAGCAGAAUUgggaccuaagaggaca
....((((((((.((((((((((((((((((....((((((..........))))))....)))))))))))))))))).))))))))....

Structure

ugau        g                  GAAA      agag 
    uucuuggg cccaaUUCUGCUCUUAUU    UCAGUg    u
    |||||||| ||||||||||||||||||    ||||||     
    gagaaucc gggUUAAGACGAGGGUAA    AGUuac    c
acag        a                  AUUC      cguc 

Annotation confidence Not enough data

Genome context

chr3: 31872434-31872525 [-]

Mature tgu-miR-1784-3p

• Accession: MIMAT0014457
• Description: Taeniopygia guttata tgu-miR-1784-3p mature miRNA
• Sequence: 55 - UGACUUAAAUGGGAGCAGAAUU - 76
• Evidence: experimental ; Illumina [1-2]

Mature tgu-miR-1784-5p

• Accession: MIMAT0026960
• Description: Taeniopygia guttata tgu-miR-1784-5p mature miRNA
• Sequence: 19 - UUCUGCUCUUAUUGAAAUCAGU - 40
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727