Stem-loop tgu-mir-2963

Accession

MI0013650

Description

Taeniopygia guttata tgu-mir-2963 precursor miRNA

Literature search

1 open access papers mention tgu-mir-2963
(1 sentences)

Sequence

ccaggagguuuugggguggccucaccucucagcacggauuuggaauugagucacugggugACUUCCCAGCAUCCCUGUUUCCuuuggaucucgggaggAAAAGGGAUUUUUGGGAUGAGAuucagugucgagcucaaaggaugucuugguggaggagguggccggauccugagcgcugcugg
((((.((((((.(((.(((((.(.((((.((.((.((((......((((((((((((((..(.((((((.((((((.((((((((.(....).))))))))))))))..)))))).)..))))))))....)))))).....)))))).))))))..).)))))..))).)))).)).))))

Structure

    g  -    u   -g     u -a    u  g  c    uuggaa      ----        gA U      -C      G        g a 
ccag ag guuu ggg  uggcc c  ccuc ca ca ggau      uugagu    cacugggu  C UCCCAG  AUCCCU UUUCCuuu g u
|||| || |||| |||  ||||| |  |||| || || ||||      ||||||    ||||||||  | ||||||  |||||| |||||||| |  
gguc uc cgag ccu  gccgg g  ggag gu gu ucug      aacucg    gugacuuA  G AGGGUU  UAGGGA AAAggagg c c
    g  g    u   ag     u ga    -  g  -    -uagga      agcu        GA U      UU      -        g u 

Annotation confidence Not enough data

Genome context

chr22_random: 503984-504165 [+]

Mature tgu-miR-2963-3p

• Accession: MIMAT0014463
• Description: Taeniopygia guttata tgu-miR-2963-3p mature miRNA
• Sequence: 99 - AAAAGGGAUUUUUGGGAUGAGA - 120
• Evidence: experimental ; Illumina [1-2]

Mature tgu-miR-2963-5p

• Accession: MIMAT0026961
• Description: Taeniopygia guttata tgu-miR-2963-5p mature miRNA
• Sequence: 61 - ACUUCCCAGCAUCCCUGUUUCC - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727