Stem-loop tgu-mir-458

Accession

MI0013653

Description

Taeniopygia guttata tgu-mir-458 precursor miRNA

Gene family

MIPF0000179; mir-458

Sequence

ggugccgaugacAGCGCCAUUUCCAGAGCUAUCAacagugucauugucAUAGCUCUUGGAAUGGUUCUGCcauaagcacu
(((((..(((.(((.((((((((.((((((((..(((((...))))).)))))))).)))))))).))).)))..)))))

Structure

     cg   a   C        C        CA     g 
ggugc  aug cAG GCCAUUUC AGAGCUAU  acagu  
|||||  ||| ||| |||||||| ||||||||  ||||| u
ucacg  uac GUC UGGUAAGG UCUCGAUA  uguua  
     aa   C   U        U        -c     c 

Annotation confidence Not enough data

Genome context

chr13: 1397261-1397340 [-]

Mature tgu-miR-458-3p

• Accession: MIMAT0014466
• Description: Taeniopygia guttata tgu-miR-458-3p mature miRNA
• Sequence: 49 - AUAGCUCUUGGAAUGGUUCUGC - 70
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-458-5p

• Accession: MIMAT0026962
• Description: Taeniopygia guttata tgu-miR-458-5p mature miRNA
• Sequence: 13 - AGCGCCAUUUCCAGAGCUAUCA - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727