Stem-loop tgu-mir-2970

Accession

MI0013665

Description

Taeniopygia guttata tgu-mir-2970 precursor miRNA

Gene family

MIPF0001328; mir-2970

Sequence

agcaugucccucuggccaggcagggguucugggcagcuccugcccugcgGACAGUCAGCAGUUGGUCUGGugugagcagcaauucucAGAUCACCUCUUGGCUGUGGGUggugcagggagcaccccaccauggcauggcugggggacauguu
.(((((((((.(((((((.((...(((...(((..((((((((.((((..((((((((.((.(((((((((((.....)))....)))))))).)).))))))))..)))).))).)))))..))))))...)).)))))))))))))))).

Structure

a         u       g  agg   ucu   ca     -   c    gG        C  U        ----   g 
 gcauguccc cuggcca gc   ggu   ggg  gcucc ugc cugc  ACAGUCAG AG UGGUCUGG    ugu a
 ||||||||| ||||||| ||   |||   |||  ||||| ||| ||||  |||||||| || ||||||||    ||| g
 uguacaggg ggucggu cg   cca   ccc  cgagg acg ggUG  UGUCGGUU UC ACUAGAcu    acg c
u         -       a  gua   ---   ca     g   u    GG        C  C        cuua   a 

Annotation confidence Not enough data

Genome context

chr12: 12254481-12254632 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-2970

Mature tgu-miR-2970-5p

• Accession: MIMAT0014479
• Description: Taeniopygia guttata tgu-miR-2970-5p mature miRNA
• Sequence: 50 - GACAGUCAGCAGUUGGUCUGG - 70
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-2970-3p

• Accession: MIMAT0026966
• Description: Taeniopygia guttata tgu-miR-2970-3p mature miRNA
• Sequence: 88 - AGAUCACCUCUUGGCUGUGGGU - 109
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727