Stem-loop tgu-mir-2188

Accession

MI0013666

Description

Taeniopygia guttata tgu-mir-2188 precursor miRNA

Sequence

gagguuagauggcacuuugggguuuccuucugaggaauaucagaccugugggaAAGGUCCAACCUCACAUGUCCUguauagaauaaagagggAUAUAUGUGGUCAGACCUAUCccacaaguccuguauucuuacucaaguucagagaccuugacaugccaucugaucuu
((((((((((((((..((((((((((...(((((((((((..(((.(((((((.(((((..(((.((.(((((((..............))))))).)).)))..))))).))))))).)))..))))))...))).))....))))))))))..))))))))))))))

Structure

              cu          -cuu  -   ---      ca   c       A     CA   U  C       guauag 
gagguuagauggca  uugggguuuc    cu gag   gaauau  gac uguggga AGGUC  ACC CA AUGUCCU      a
||||||||||||||  ||||||||||    || |||   ||||||  ||| ||||||| |||||  ||| || |||||||       
uucuagucuaccgu  aguuccagag    ga cuc   cuuaug  cug acaccCU UCCAG  UGG GU UAUAggg      a
              ac          acuu  a   auu      uc   a       A     AC   U  A       agaaau 

Annotation confidence Not enough data

Genome context

chr22: 3239208-3239376 [-]

Mature tgu-miR-2188-5p

• Accession: MIMAT0014480
• Description: Taeniopygia guttata tgu-miR-2188-5p mature miRNA
• Sequence: 54 - AAGGUCCAACCUCACAUGUCCU - 75
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-2188-3p

• Accession: MIMAT0026967
• Description: Taeniopygia guttata tgu-miR-2188-3p mature miRNA
• Sequence: 93 - AUAUAUGUGGUCAGACCUAUC - 113
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727