Stem-loop tgu-mir-2972

Accession

MI0013668

Description

Taeniopygia guttata tgu-mir-2972 precursor miRNA

Sequence

ccagaccugcaaagguaaUCAGGUGCUCAACUCCUAUUUaggcaccagccucccacugaagucugaaauagaaguuaggccccuaaauaucucugugggucugg
(((((((((((.(((((...(((.(((.((((.((((((((((..(((.......)))..))))).))))).)))).))).)))...))))).)))))))))))

Structure

           a     aUC   U   C    C     -     ac   cc 
ccagaccugca aggua   AGG GCU AACU CUAUU Uaggc  cag  u
||||||||||| |||||   ||| ||| |||| ||||| |||||  |||  c
ggucugggugu ucuau   ucc cgg uuga gauaa gucug  guc  c
           c     aaa   c   a    a     a     aa   ac 

Annotation confidence Not enough data

Genome context

chr2: 61107767-61107870 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-2972

Mature tgu-miR-2972

• Accession: MIMAT0014482
• Description: Taeniopygia guttata tgu-miR-2972 mature miRNA
• Sequence: 19 - UCAGGUGCUCAACUCCUAUUU - 39
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727