Stem-loop tgu-mir-139

Accession

MI0013689

Description

Taeniopygia guttata tgu-mir-139 precursor miRNA

Sequence

ggccuggcuguauUCUACAGUGCAUGUGUCUCCAGUgugaguaagugacUGGAGAUGCGGCCCUGUUGGAAUaacauccagugcc
(((((((.((((((((((((.((.((((((((((((...........)))))))))))))).))).)))))).))).)))).)))

Structure

   -    c   -      -   U  A            guga 
ggc cugg ugu auUCUA CAG GC UGUGUCUCCAGU    g
||| |||| ||| |||||| ||| || ||||||||||||    u
ccg gacc aca UAAGGU GUC CG GCGUAGAGGUca    a
   u    u   a      U   C  -            guga 

Annotation confidence Not enough data

Genome context

chr1: 113641295-113641379 [-]

Mature tgu-miR-139-5p

• Accession: MIMAT0014500
• Description: Taeniopygia guttata tgu-miR-139-5p mature miRNA
• Sequence: 14 - UCUACAGUGCAUGUGUCUCCAGU - 36
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-139-3p

• Accession: MIMAT0014626
• Description: Taeniopygia guttata tgu-miR-139-3p mature miRNA
• Sequence: 50 - UGGAGAUGCGGCCCUGUUGGAAU - 72
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727