Stem-loop tgu-mir-148a

Accession

MI0013693

Description

Taeniopygia guttata tgu-mir-148a precursor miRNA

Gene family

MIPF0000056; mir-148

Sequence

ccccggcgccgguaccggcggaggacuggagccuccggaagcAAAGUUCUGUGACACUCCGACUcuggguacgauagcagUCAGUGCACUACAGAACUUUGUcuccggcggc
..((..(((((....)))))..))......(((.(((((.(((((((((((((.((((..(((((((.......))).))))))))...))))))))))))).))))).)))

Structure

ccccggcgccgguaccggcggaggacugga   u     a             --A    CC    -   gg 
                              gcc ccgga gcAAAGUUCUGUG   CACU  GACU cug  u
                              ||| ||||| |||||||||||||   ||||  |||| |||  a
                              cgg ggccu UGUUUCAAGACAU   GUGA  CUga gau  c
------------------------------   c     c             CAC    --    c   ag 

Annotation confidence Not enough data

Genome context

chr2: 52006663-52006774 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-148a

Mature tgu-miR-148a-3p

• Accession: MIMAT0014503
• Description: Taeniopygia guttata tgu-miR-148a-3p mature miRNA
• Sequence: 81 - UCAGUGCACUACAGAACUUUGU - 102
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-148a-5p

• Accession: MIMAT0026973
• Description: Taeniopygia guttata tgu-miR-148a-5p mature miRNA
• Sequence: 43 - AAAGUUCUGUGACACUCCGACU - 64
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727