miRBase entry: tgu-mir-7-3

Stem-loop tgu-mir-7-3

Accession

MI0013706

Description

Taeniopygia guttata tgu-mir-7-3 precursor miRNA

Literature search

1 open access papers mention tgu-mir-7-3
(5 sentences)

Sequence

ugcuucccugUGGAAGACUAGUGAUUUUGUUGUuguauggcucaucccaccacaacaagucacagucugcccu
...........((.(((((.(((((((.(((((.((..((......)))).))))))))))))))))).))..

Structure

ugcuucccugU  A     A       U     u  au  cu 
           GG AGACU GUGAUUU GUUGU gu  gg  c
           || ||||| ||||||| ||||| ||  ||   
           cc ucuga cacugaa caaca ca  cc  a
---------uc  g     -       -     c  --  cu

Annotation confidence Not enough data

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Genome context

chr10: 13225597-13225669 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-7-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tgu-miR-7-5p

Accession	MIMAT0014510
Description	Taeniopygia guttata tgu-miR-7-5p mature miRNA
Sequence	11 - UGGAAGACUAGUGAUUUUGUUGU - 33
Evidence	experimental 454 [1], Illumina [1-2]

References

PubMed ID: 20360741
The genome of a songbird
"Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
"Nature (2010) 464:757-762

PubMed ID: 23268654
Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
BMC Genomics (2012) 13:727