Stem-loop tgu-mir-128-1

Accession

MI0013712

Description

Taeniopygia guttata tgu-mir-128-1 precursor miRNA

Gene family

MIPF0000048; mir-128

Sequence

ggauuCGGGGCCGUAACACUGUCUGAgagguuuacauuucUCACAGUGAACCGGUCUCUUUuucagcugcu
(((...(((((((...((((((..(((((((....)))))))))))))...)))))))...))).......

Structure

-------   uuC       UAA      CU       u 
       gga   GGGGCCG   CACUGU  GAgaggu u
       |||   |||||||   ||||||  |||||||  
       cuu   CUCUGGC   GUGACA  CUcuuua a
ucgucga   UUU       CAA      --       c 

Annotation confidence Not enough data

Genome context

chr7: 33186771-33186841 [+]

Mature tgu-miR-128-3p

• Accession: MIMAT0014513
• Description: Taeniopygia guttata tgu-miR-128-3p mature miRNA
• Sequence: 41 - UCACAGUGAACCGGUCUCUUU - 61
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-128-1-5p

• Accession: MIMAT0031084
• Description: Taeniopygia guttata tgu-miR-128-1-5p mature miRNA
• Sequence: 6 - CGGGGCCGUAACACUGUCUGA - 26
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727