Stem-loop tgu-mir-1559

Accession

MI0013738

Description

Taeniopygia guttata tgu-mir-1559 precursor miRNA

Sequence

caccaagggagcccaggcagcacagagaagguggauucugcacacaaacacucggcgcuguagccguggccgagugugggaugcugaggucuagacuccuUUCGAUGCUUGUAUGCUACUCCcaggaaugcc
..((..(((((..((.((((((..((((.(((((((((.(((..(..(((((((((..((....))..))))))))).)..))).)).)))))....))))))..))).))).))...))))).))......

Structure

----ca  aa     -cc  g   -   ca    a  ----     -  u   ca aa         gc  u 
      cc  gggag   ca gca gca  gaga gg    uggau uc gca  c  acacucggc  ug a
      ||  |||||   || ||| |||  |||| ||    ||||| || |||  |  |||||||||  ||  
      gg  cCCUC   GU UGU CGU  CUUu cc    aucug ag cgu  g  ugugagccg  gc g
ccguaa  -a     AUC  A   U   AG    -  ucag     g  u   ag -g         gu  c 

Annotation confidence Not enough data

Genome context

chr7: 27262570-27262701 [-]

Mature tgu-miR-1559

• Accession: MIMAT0014526
• Description: Taeniopygia guttata tgu-miR-1559 mature miRNA
• Sequence: 101 - UUCGAUGCUUGUAUGCUACUCC - 122
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727