Stem-loop tgu-mir-383

Accession

MI0013744

Description

Taeniopygia guttata tgu-mir-383 precursor miRNA

Gene family

MIPF0000137; mir-383

Sequence

ccugcuccucAGAUCAGAAGGUGAUUGUGGCUuugaguaaauauuaagcagCCACAGCACUGCCUGGUCAGA
...........((((((..((((.((((((((((((.......))))..))))))))))))..))))))...

Structure

ccugcuccucA      AA    A        --    gu 
           GAUCAG  GGUG UUGUGGCU  uuga  a
           ||||||  |||| ||||||||  ||||  a
           CUGGUC  UCAC GACACCga  aauu  a
--------AGA      CG    -        cg    au 

Annotation confidence Not enough data

Genome context

chr4: 42215192-42215263 [+]

Mature tgu-miR-383-5p

• Accession: MIMAT0014531
• Description: Taeniopygia guttata tgu-miR-383-5p mature miRNA
• Sequence: 11 - AGAUCAGAAGGUGAUUGUGGCU - 32
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-383-3p

• Accession: MIMAT0026989
• Description: Taeniopygia guttata tgu-miR-383-3p mature miRNA
• Sequence: 52 - CCACAGCACUGCCUGGUCAGA - 72
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727