Stem-loop tgu-mir-451

Accession

MI0013747

Description

Taeniopygia guttata tgu-mir-451 precursor miRNA

Gene family

MIPF0000148; mir-451

Literature search

1 open access papers mention tgu-mir-451
(5 sentences)

Sequence

gccggcggggAAACCGUUACCAUUACUGAGUUUaguaaugguaacgguucugccgacggccggcaaggcggca
..(((((((...(((((((((((((((......))))))))))))))))))))))...((((......)))).

Structure

----------------gc       gAA               GA 
                  cggcggg   ACCGUUACCAUUACU  G
                  |||||||   |||||||||||||||   
                  gccgucu   uggcaaugguaauga  U
acggcggaacggccggca       ---               UU 

Annotation confidence Not enough data

Genome context

chr19: 7265342-7265414 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-451

Mature tgu-miR-451

• Accession: MIMAT0014533
• Description: Taeniopygia guttata tgu-miR-451 mature miRNA
• Sequence: 11 - AAACCGUUACCAUUACUGAGUUU - 33
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727