Stem-loop tgu-mir-27a

Accession

MI0013748

Description

Taeniopygia guttata tgu-mir-27a precursor miRNA

Sequence

aucucucuggcgaggugcAGAGCUUAGCUGAUUGGUGAACagugauuguuuuccucuuugUUCACAGUGGCUAAGUUCUGCaccugaagag
....((((....(((((((((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))))))))..))))

Structure

aucu    ggcg                 G    G       u  uug 
    cucu    aggugcAGAGCUUAGCU AUUG UGAACag ga   u
    ||||    ||||||||||||||||| |||| ||||||| ||   u
    gaga    uccaCGUCUUGAAUCGG UGAC ACUUguu cu   u
----    --ag                 -    -       u  ccu 

Annotation confidence Not enough data

Genome context

chrZ: 9900324-9900414 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tgu-mir-27a

Mature tgu-miR-27a-5p

• Accession: MIMAT0026991
• Description: Taeniopygia guttata tgu-miR-27a-5p mature miRNA
• Sequence: 19 - AGAGCUUAGCUGAUUGGUGAAC - 40
• Evidence: experimental ; Illumina [2]

Mature tgu-miR-27a-3p

• Accession: MIMAT0014534
• Description: Taeniopygia guttata tgu-miR-27a-3p mature miRNA
• Sequence: 61 - UUCACAGUGGCUAAGUUCUGC - 81
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727