Stem-loop tgu-mir-30a

Accession

MI0013749

Description

Taeniopygia guttata tgu-mir-30a precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

uuggggcagucagugccucUGUAAACAUCCUUGACUGGAAGCUggaagggcuggaaggagCUUUCAGUCGGAUGUUUACAGCagcaggcugc
.....((((((..(((..((((((((((((..(((((((((((...............)))))))))))))))))))))))..)))))))))

Structure

uuggg      ag   cu            UU           ggaagg 
     gcaguc  ugc  cUGUAAACAUCC  GACUGGAAGCU      g
     ||||||  |||  ||||||||||||  |||||||||||      c
     cgucgg  acg  GACAUUUGUAGG  CUGACUUUCga      u
-----      --   aC            --           ggaagg 

Annotation confidence Not enough data

Genome context

chr23_random: 192848-192939 [+]

Mature tgu-miR-30a-5p

• Accession: MIMAT0014637
• Description: Taeniopygia guttata tgu-miR-30a-5p mature miRNA
• Sequence: 20 - UGUAAACAUCCUUGACUGGAAGCU - 43
• Evidence: experimental ; 454 [1], Illumina [2]

Mature tgu-miR-30a-3p

• Accession: MIMAT0014535
• Description: Taeniopygia guttata tgu-miR-30a-3p mature miRNA
• Sequence: 61 - CUUUCAGUCGGAUGUUUACAGC - 82
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727