Stem-loop tgu-mir-338

Accession

MI0013756

Description

Taeniopygia guttata tgu-mir-338 precursor miRNA

Gene family

MIPF0000097; mir-338

Sequence

agcAACACUAUCCUGAUGCUGUCAgaguaagugguaaagcUCCAGCAUCAGUGAUUUUGUUGuuagugguaa
(((((((..((((((((((((...((((..........))))))))))))).)))..)))))))........

Structure

--------       CU   -         UCA    aagu 
        agcAACA  AUC CUGAUGCUG   gagu    g
        |||||||  ||| |||||||||   ||||     
        uuGUUGU  UAG GACUACGAC   CUcg    g
aaugguga       UU   U         ---    aaau 

Annotation confidence Not enough data

Genome context

chr14: 14972005-14972076 [-]

Mature tgu-miR-338-5p

• Accession: MIMAT0017389
• Description: Taeniopygia guttata tgu-miR-338-5p mature miRNA
• Sequence: 4 - AACACUAUCCUGAUGCUGUCA - 24
• Evidence: experimental ; Illumina [2]

Mature tgu-miR-338-3p

• Accession: MIMAT0014542
• Description: Taeniopygia guttata tgu-miR-338-3p mature miRNA
• Sequence: 41 - UCCAGCAUCAGUGAUUUUGUUG - 62
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727