Stem-loop tgu-mir-15a

Accession

MI0013772

Description

Taeniopygia guttata tgu-mir-15a precursor miRNA

Gene family

MIPF0000006; mir-15

Literature search

1 open access papers mention tgu-mir-15a
(1 sentences)

Sequence

uggcauaacgUAGCAGCACAUAAUGGUUUGUggguuuugaaaaggugCAGGCCAUAUUGUGCUGCCUCAaa
.........(..((((((((..((((((((((.............))))))))))..))))))))..)...

Structure

uggcauaac UA        UA          gguuu 
         g  GCAGCACA  AUGGUUUGUg     u
         |  ||||||||  ||||||||||     g
         C  CGUCGUGU  UACCGGACgu     a
------aaA UC        UA          ggaaa 

Annotation confidence Not enough data

Genome context

chr1: 55909891-55909961 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-15a

Mature tgu-miR-15a-5p

• Accession: MIMAT0014555
• Description: Taeniopygia guttata tgu-miR-15a-5p mature miRNA
• Sequence: 11 - UAGCAGCACAUAAUGGUUUGU - 31
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-15a-3p

• Accession: MIMAT0027000
• Description: Taeniopygia guttata tgu-miR-15a-3p mature miRNA
• Sequence: 48 - CAGGCCAUAUUGUGCUGCCUCA - 69
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727