Stem-loop tgu-mir-216a

Accession

MI0013803

Description

Taeniopygia guttata tgu-mir-216a precursor miRNA

Gene family

MIPF0000054; mir-216

Sequence

ugaguuggcuUAAUCUCAGCUGGCAACUGUGAgcaguuaauaacucucuCACAGUUGUAGCUGGGAUUAUGc
.......((.((((((((((((.((((((((((.((((...))))..)))))))))))))))))))))).))

Structure

ugaguug  u            G          -c    a 
       gc UAAUCUCAGCUG CAACUGUGAg  aguu  
       || |||||||||||| ||||||||||  |||| a
       cG AUUAGGGUCGAU GUUGACACuc  ucaa  
-------  U            -          uc    u 

Annotation confidence Not enough data

Genome context

chr3: 28149612-28149683 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tgu-mir-216a

Mature tgu-miR-216a-5p

• Accession: MIMAT0014576
• Description: Taeniopygia guttata tgu-miR-216a-5p mature miRNA
• Sequence: 11 - UAAUCUCAGCUGGCAACUGUGA - 32
• Evidence: experimental ; 454 [1], Illumina [2]

Mature tgu-miR-216a-3p

• Accession: MIMAT0027008
• Description: Taeniopygia guttata tgu-miR-216a-3p mature miRNA
• Sequence: 50 - CACAGUUGUAGCUGGGAUUAUG - 71
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727