Stem-loop tgu-mir-130b

Accession

MI0013805

Description

Taeniopygia guttata tgu-mir-130b precursor miRNA

Sequence

cccccagcccggcagccgccgcagcugcugugccagcgcugggaccaccggccgggcugccCCUCUUUCCCUGUUGCACUACUgucacggucgcagcgagCAGUGCAAUAAUGAAAGGGCGUcagugcgccg
....(((((((((.....((.((((.((((...)))))))))).......))))))))).....(((((..(((((((((.((((..(....)..)).)).)))))))))..)))))(((((....))))).

Structure

cccccagcccggcagccgccgcagcugcugugccagcgcugggaccaccggccgggcugccCCU     CC         A  -  ca g 
                                                                CUUUC  UGUUGCACU CU gu  c g
                                                                |||||  ||||||||| || ||  |  
                                                                GAAAG  AUAACGUGA ga cg  g u
-------------------------------------------------gccgcgugacUGCGG     UA         C  g  ac c 

Annotation confidence Not enough data

Genome context

chr15: 8487921-8488052 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tgu-mir-130b

Mature tgu-miR-130b-5p

• Accession: MIMAT0014646
• Description: Taeniopygia guttata tgu-miR-130b-5p mature miRNA
• Sequence: 62 - CCUCUUUCCCUGUUGCACUACU - 83
• Evidence: experimental ; 454 [1], Illumina [2]

Mature tgu-miR-130b-3p

• Accession: MIMAT0014578
• Description: Taeniopygia guttata tgu-miR-130b-3p mature miRNA
• Sequence: 101 - CAGUGCAAUAAUGAAAGGGCGU - 122
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727