Stem-loop tgu-mir-217

Accession

MI0013806

Description

Taeniopygia guttata tgu-mir-217 precursor miRNA

Gene family

MIPF0000077; mir-217

Sequence

augucgcagAUACUGCAUCAGGAACUGAUUGgauaauaaucacucaccAUCAGUUCCUAAUGCAUUGCCUuca
.....((((....(((((.((((((((((.((..............)))))))))))).))))))))).....

Structure

auguc    AUAC     C          U  auaaua 
     gcag    UGCAU AGGAACUGAU Gg      a
     ||||    ||||| |||||||||| ||       
     CGUU    ACGUA UCCUUGACUA cc      u
acuUC    ----     A          -  acucac 

Annotation confidence Not enough data

Genome context

chr3: 28151737-28151809 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tgu-mir-217

Mature tgu-miR-217-5p

• Accession: MIMAT0014579
• Description: Taeniopygia guttata tgu-miR-217-5p mature miRNA
• Sequence: 10 - AUACUGCAUCAGGAACUGAUUG - 31
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-217-3p

• Accession: MIMAT0027010
• Description: Taeniopygia guttata tgu-miR-217-3p mature miRNA
• Sequence: 49 - AUCAGUUCCUAAUGCAUUGCCU - 70
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727