Stem-loop tgu-mir-216b

Accession

MI0013821

Description

Taeniopygia guttata tgu-mir-216b precursor miRNA

Sequence

acagacugggAAAUCUCUGCAGGCAAGUGUGaugucuuuauagcaaucucACAAUUACCUGUAGAGAUUCU
........((((.((((((((((.((.(((((((.((....))))...))))).)).))))))))))))))

Structure

acagacug    A          C  G     ---  u  u 
        ggAA UCUCUGCAGG AA UGUGa   ug cu u
        |||| |||||||||| || |||||   || ||  
        UCUU AGAGAUGUCC UU ACAcu   ac ga a
--------    -          A  A     cua  -  u 

Annotation confidence Low

Genome context

chr3: 28144514-28144584 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tgu-mir-216b

Mature tgu-miR-216b-5p

• Accession: MIMAT0014593
• Description: Taeniopygia guttata tgu-miR-216b-5p mature miRNA
• Sequence: 11 - AAAUCUCUGCAGGCAAGUGUG - 31
• Evidence: experimental ; 454 [1], Illumina [2]

Mature tgu-miR-216b-3p

• Accession: MIMAT0027018
• Description: Taeniopygia guttata tgu-miR-216b-3p mature miRNA
• Sequence: 51 - ACAAUUACCUGUAGAGAUUCU - 71
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727