Stem-loop tgu-mir-214

Accession

MI0013833

Description

Taeniopygia guttata tgu-mir-214 precursor miRNA

Literature search

1 open access papers mention tgu-mir-214
(1 sentences)

Sequence

gacggaguugucaugugucUGCCUGUCUACACUUGCUGUGCagaacauccucucaccuguACAGCAGGCACAGACAGGCAGUcgcaugacaa
.......((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))

Structure

gacggag          u          ACA            aacau 
       uugucaugug cUGCCUGUCU   CUUGCUGUGCag     c
       |||||||||| ||||||||||   ||||||||||||     c
       aacaguacgc GACGGACAGA   GGACGACAuguc     u
-------          U          CAC            cacuc 

Annotation confidence Not enough data

Genome context

chr8_random: 1635714-1635805 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-214

Mature tgu-miR-214-3p

• Accession: MIMAT0014603
• Description: Taeniopygia guttata tgu-miR-214-3p mature miRNA
• Sequence: 61 - ACAGCAGGCACAGACAGGCAGU - 82
• Evidence: experimental ; 454 [1], Illumina [2]

Mature tgu-miR-214-5p

• Accession: MIMAT0027021
• Description: Taeniopygia guttata tgu-miR-214-5p mature miRNA
• Sequence: 20 - UGCCUGUCUACACUUGCUGUGC - 41
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727