Stem-loop tgu-mir-489

Accession

MI0013849

Description

Taeniopygia guttata tgu-mir-489 precursor miRNA

Sequence

ugucacgugguggcuuggUGGUCGUAUGUAUGACGUCAUUuacuuggacuuuuaggaGUGACAUCAUAUGUACGGCUGCuaaacugcugcaugggaca
((((..(((((((.(((((((((((((((((((.((((((..(((((....))))))))))).))))))))))))))))))).)))))))....))))

Structure

    --ac       c                   C      ua     a 
uguc    guggugg uuggUGGUCGUAUGUAUGA GUCAUU  cuugg c
||||    ||||||| ||||||||||||||||||| ||||||  |||||  
acag    cgucguc aauCGUCGGCAUGUAUACU CAGUGa  ggauu u
    ggua       a                   A      --     u 

Annotation confidence Not enough data

Genome context

chr2: 25436279-25436376 [-]

Mature tgu-miR-489-3p

• Accession: MIMAT0014618
• Description: Taeniopygia guttata tgu-miR-489-3p mature miRNA
• Sequence: 58 - GUGACAUCAUAUGUACGGCUGC - 79
• Evidence: experimental ; Illumina [1-2]

Mature tgu-miR-489-5p

• Accession: MIMAT0027024
• Description: Taeniopygia guttata tgu-miR-489-5p mature miRNA
• Sequence: 19 - UGGUCGUAUGUAUGACGUCAUU - 40
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727