Stem-loop tgu-mir-15c

Accession

MI0013850

Description

Taeniopygia guttata tgu-mir-15c precursor miRNA

Gene family

MIPF0000006; mir-15

Sequence

cuuugaggagaugUAGCAGCACAUCAUGGUUUGUagggacaaggagauaCAGACCAUUCUGGGCUGCCUCAuuaccucaagg
((((((((.((((..(((((.((..((((((((((............))))))))))..)).)))))..)))).))))))))

Structure

        a    UA     A  UC          gggac 
cuuugagg gaug  GCAGC CA  AUGGUUUGUa     a
|||||||| ||||  ||||| ||  ||||||||||      
ggaacucc uuAC  CGUCG GU  UACCAGACau     a
        a    UC     G  CU          agagg 

Annotation confidence Not enough data

Genome context

chr4A: 7177772-7177853 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-15c

Mature tgu-miR-15c-5p

• Accession: MIMAT0014619
• Description: Taeniopygia guttata tgu-miR-15c-5p mature miRNA
• Sequence: 14 - UAGCAGCACAUCAUGGUUUGU - 34
• Evidence: experimental ; Illumina [1-2]

Mature tgu-miR-15c-3p

• Accession: MIMAT0027025
• Description: Taeniopygia guttata tgu-miR-15c-3p mature miRNA
• Sequence: 50 - CAGACCAUUCUGGGCUGCCUCA - 71
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727