Stem-loop bmo-mir-2998

Accession

MI0013854

Description

Bombyx mori bmo-mir-2998 precursor miRNA

Literature search

1 open access papers mention bmo-mir-2998
(5 sentences)

Sequence

768 reads, 138 reads per million, 3 experiments

AAGAACAGGAUGAGGUAGAUAAAcagguuaaggaguggcuggaacaaggaguuauucggguaagcuuuucugaauauacuagcccaauuguucuu
((((((((..((.((((((((..((((....(((((.(((.(((.((....)).))).)))..)))))))))..))).)).))))).))))))))

Structure

        GA  A   -  -   AA    uuaa     -g   g   c  g 
AAGAACAG  UG GGU AG AUA  cagg    ggagu  gcu gaa aa g
||||||||  || ||| || |||  ||||    |||||  ||| ||| ||  
uucuuguu  ac ccg uc uau  gucu    uuucg  ugg cuu uu a
        -a  -   a  a   aa    ----     aa   g   a  g 

Annotation confidence Low

Genome context

NW_004581712.1: 4762-4856 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-2998

Mature bmo-miR-2998

• Accession: MIMAT0014659
• Description: Bombyx mori bmo-miR-2998 mature miRNA
• Sequence: 1 - AAGAACAGGAUGAGGUAGAUAAA - 23
• Evidence: experimental ; Illumina [1], SOLID [2]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415


2. PubMed ID: 20089182
   Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
   Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
   BMC Genomics (2010) 11:52