Stem-loop bmo-mir-2733f

Accession

MI0013856

Description

Bombyx mori bmo-mir-2733f precursor miRNA

Literature search

1 open access papers mention bmo-mir-2733f
(6 sentences)

Sequence

16524 reads, 253.0 reads per million, 14 experiments

acgucuacauugcuaaucugucuauaaaagacAGUUAUUACUAACUCGGUAGACAcgucacugugUCACUGGGUAUGUAAUGACAGUcguugauagauaaucgcgucguaccaaacgu
((((.(((..(((.....(((((((....(((.((((((((..(((((((.(((((......))))))))))))..)))))))).)))....)))))))...)))..)))....))))

Structure

    ---c   au   uaauc       aaaa   A        UA       A     gu 
acgu    uac  ugc     ugucuau    gac GUUAUUAC  ACUCGGU GACAc  c
||||    |||  |||     |||||||    ||| ||||||||  ||||||| |||||   
ugca    aug  gcg     auagaua    cUG CAGUAAUG  UGGGUCA CUgug  a
    aacc   cu   --cua       guug   A        UA       -     uc 

Annotation confidence High

Genome context

dbj|BSVE01000011.1|: 366949-367066 [-]

Clustered miRNAs

17 other miRNAs are < 10 kb from bmo-mir-2733f

Mature bmo-miR-2733f-5p

• Accession: MIMAT0053217
• Description: Bombyx mori bmo-miR-2733f-5p mature miRNA
• Sequence: 33 - AGUUAUUACUAACUCGGUAGACA - 55
• Evidence: experimental ; Illumina [1], SOLID [2]

Mature bmo-miR-2733f-3p

• Accession: MIMAT0014661
• Description: Bombyx mori bmo-miR-2733f-3p mature miRNA
• Sequence: 66 - UCACUGGGUAUGUAAUGACAGU - 87
• Evidence: experimental ; Illumina [1], SOLID [2]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415


2. PubMed ID: 20089182
   Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
   Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
   BMC Genomics (2010) 11:52