Stem-loop bmo-mir-2733g

Accession

MI0013857

Description

Bombyx mori bmo-mir-2733g precursor miRNA

Literature search

1 open access papers mention bmo-mir-2733g
(4 sentences)

Sequence

24305 reads, 316.0 reads per million, 17 experiments

uaUCACUGGGUGCAUGAAGAUUGugguacagagaucaucacaucacgccgccgugacaucucuucuagcugucuuucucucucuaaugcAGUCAUCAUACUCUGAGUUGAua
(((((((.((.(.((((.(((((((.((.(((((.....((((((((....))))).............))).....))))).)).))))))).)))).).)).)).)))))

Structure

     -  G  U C    A       g  c     ucauc   -------------     c 
uaUCA CU GG G AUGA GAUUGug ua agaga     aca             ucacg c
||||| || || | |||| ||||||| || |||||     |||             |||||  
auAGU GA UC C UACU CUGAcgu au ucucu     ugu             agugc g
     U  G  U A    A       a  c     cuuuc   cgaucuucucuac     c 

Annotation confidence High

Genome context

dbj|BSVE01000011.1|: 369577-369688 [-]

Clustered miRNAs

17 other miRNAs are < 10 kb from bmo-mir-2733g

Mature bmo-miR-2733g-5p

• Accession: MIMAT0014662
• Description: Bombyx mori bmo-miR-2733g-5p mature miRNA
• Sequence: 3 - UCACUGGGUGCAUGAAGAUUG - 23
• Evidence: experimental ; Illumina [1], SOLID [2]

Mature bmo-miR-2733g-3p

• Accession: MIMAT0053218
• Description: Bombyx mori bmo-miR-2733g-3p mature miRNA
• Sequence: 90 - AGUCAUCAUACUCUGAGUUGA - 110
• Evidence: experimental ; Illumina [1], SOLID [2]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415


2. PubMed ID: 20089182
   Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
   Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
   BMC Genomics (2010) 11:52