miRBase entry: bmo-mir-2733g

Stem-loop bmo-mir-2733g


Accession
MI0013857
Description
Bombyx mori bmo-mir-2733g precursor miRNA
Gene family
MIPF0000766; mir-2733

Literature search
1 open access papers mention bmo-mir-2733g
(4 sentences)

Sequence

6 reads, 1 reads per million, 2 experiments
uaUCACUGGGUGCAUGAAGAUUGugguacagagaucaucacaucacgccgccgugacaucucuucuagcugucuuucucucucuaaugcagucaucauacucugaguugaua
(((((((.((.(.((((.(((((((.((.(((((.....((((((((....))))).............))).....))))).)).))))))).)))).).)).)).)))))

Structure
     -  G  U C    A       g  c     ucauc   -------------     c 
uaUCA CU GG G AUGA GAUUGug ua agaga     aca             ucacg c
||||| || || | |||| ||||||| || |||||     |||             |||||  
auagu ga uc c uacu cugacgu au ucucu     ugu             agugc g
     u  g  u a    a       a  c     cuuuc   cgaucuucucuac     c 


Annotation confidence Not enough data
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Genome context
NW_004581684.1: 347847-347958 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from bmo-mir-2733g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2733g

Accession MIMAT0014662
Description Bombyx mori bmo-miR-2733g mature miRNA
Sequence 3 - UCACUGGGUGCAUGAAGAUUG - 23
Evidence experimental
Illumina [1], SOLID [2]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415

  2. PubMed ID: 20089182
    Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
    Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
    BMC Genomics (2010) 11:52