Stem-loop bmo-mir-2733a-2

Accession

MI0013858

Description

Bombyx mori bmo-mir-2733a-2 precursor miRNA

Literature search

1 open access papers mention bmo-mir-2733a-2
(8 sentences)

Sequence

10 reads, 1 reads per million, 2 experiments

uauaUCACUGGGUGCAUGAUGAUUGUgauagagagaucaccacaucacgcugccauuacaugugacaucucuucuauaucucucucuaaugcagucaucauacucucaguugauaug
((((((((((((.(.((((((((((((.((((((((........(((((.((......)))))))...............)))))))).)))))))))))).).))))).)))))))

Structure

       -     U C            a        -------ucaccaca     c  cc 
uauaUCA CUGGG G AUGAUGAUUGUg uagagaga               ucacg ug  a
||||||| ||||| | |||||||||||| ||||||||               ||||| ||   
guauagu gacuc c uacuacugacgu aucucucu               agugu ac  u
       u     u a            a        cuauaucuucucuac     -  au 

Annotation confidence Not enough data

Genome context

NW_004581684.1: 346489-346605 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from bmo-mir-2733a-2

Mature bmo-miR-2733a-5p

• Accession: MIMAT0012611
• Description: Bombyx mori bmo-miR-2733a-5p mature miRNA
• Sequence: 5 - UCACUGGGUGCAUGAUGAUUGU - 26
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20089182
   Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
   Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
   BMC Genomics (2010) 11:52