Stem-loop bmo-mir-2733h

Accession

MI0013859

Description

Bombyx mori bmo-mir-2733h precursor miRNA

Literature search

1 open access papers mention bmo-mir-2733h
(4 sentences)

Sequence

111554 reads, 2312.0 reads per million, 12 experiments

ucucucuaaugcAGUCAUCAUACUCUGAGUUGAuauguggaaaauucuaUCACUGGGUGUAUGAUGAUUGugguagagaga
((((((((.((((((((((((((.((.(((.((((.((.....))..))))))).)).)))))))))))))).))))))))

Structure

        a              U  G   U    -u  g 
ucucucua ugcAGUCAUCAUAC CU AGU GAua  gu g
|||||||| |||||||||||||| || ||| ||||  || a
agagagau guGUUAGUAGUAUG GG UCA CUau  ua a
        g              U  G   -    cu  a 

Annotation confidence High

Genome context

dbj|BSVE01000011.1|: 367931-368011 [-]

Clustered miRNAs

17 other miRNAs are < 10 kb from bmo-mir-2733h

Mature bmo-miR-2733h-5p

• Accession: MIMAT0053221
• Description: Bombyx mori bmo-miR-2733h-5p mature miRNA
• Sequence: 13 - AGUCAUCAUACUCUGAGUUGA - 33
• Evidence: experimental ; Illumina [1]

Mature bmo-miR-2733h-3p

• Accession: MIMAT0014663
• Description: Bombyx mori bmo-miR-2733h-3p mature miRNA
• Sequence: 50 - UCACUGGGUGUAUGAUGAUUG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20089182
   Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
   Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
   BMC Genomics (2010) 11:52