miRBase entry: bmo-mir-3000

Stem-loop bmo-mir-3000


Accession
MI0013860
Description
Bombyx mori bmo-mir-3000 precursor miRNA


Sequence

126 reads, 48 reads per million, 3 experiments
auaagguacucguaguaauagucuguugggucuaCUGCGCUUAGAUGAAGACACUAcauuauguauuaguguuguguucaccauguaagcgcuacagaaaugacugcucaaagugcagugu
.....(((((.(((((.....(((((..........(((((((.(((..(((((.((((((.....)))))).)))))...))).))))))).)))))....)))))....))))).....

Structure
auaag     ---c     aauag     ugggucuaCU       G   -AA     U      u 
     guacu    guagu     ucugu          GCGCUUA AUG   GACAC Acauua g
     |||||    |||||     |||||          ||||||| |||   ||||| |||||| u
     cguga    cguca     agaca          cgcgaau uac   uugug ugugau a
uguga     aacu     -guaa     ---------u       g   cac     u      u 


Annotation confidence Not enough data
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Genome context
NW_004581745.1: 994719-994839 [-]

Database links

Mature bmo-miR-3000

Accession MIMAT0014664
Description Bombyx mori bmo-miR-3000 mature miRNA
Sequence 35 - CUGCGCUUAGAUGAAGACACUA - 56
Evidence experimental
Illumina [1], SOLID [2]
Database links

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415

  2. PubMed ID: 20089182
    Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
    Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
    BMC Genomics (2010) 11:52