Stem-loop bmo-mir-3000

Accession

MI0013860

Description

Bombyx mori bmo-mir-3000 precursor miRNA

Sequence

1595 reads, 35.0 reads per million, 34 experiments

auaagguacucguaguaauagucuguugggucuaCUGCGCUUAGAUGAAGACACUAcauuauguauuagugUUGUGUUCACCAUGUAAGCGCUACagaaaugacugcucaaagugcagugu
.....(((((.(((((.....(((((..........(((((((.(((..(((((.((((((.....)))))).)))))...))).))))))).)))))....)))))....))))).....

Structure

auaag     ---c     aauag     ugggucuaCU       G   -AA     U      u 
     guacu    guagu     ucugu          GCGCUUA AUG   GACAC Acauua g
     |||||    |||||     |||||          ||||||| |||   ||||| |||||| u
     cguga    cguca     agaCA          CGCGAAU UAC   UUGUG Ugugau a
uguga     aacu     -guaa     ---------U       G   CAC     U      u 

Annotation confidence High

Genome context

dbj|BSVE01000020.1|: 11735009-11735129 [-]

Mature bmo-miR-3000-5p

• Accession: MIMAT0014664
• Description: Bombyx mori bmo-miR-3000-5p mature miRNA
• Sequence: 35 - CUGCGCUUAGAUGAAGACACUA - 56
• Evidence: experimental ; Illumina [1], SOLID [2]

Mature bmo-miR-3000-3p

• Accession: MIMAT0053222
• Description: Bombyx mori bmo-miR-3000-3p mature miRNA
• Sequence: 72 - UUGUGUUCACCAUGUAAGCGCUAC - 95
• Evidence: experimental ; Illumina [1], SOLID [2]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415


2. PubMed ID: 20089182
   Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
   Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
   BMC Genomics (2010) 11:52