Stem-loop bmo-mir-3001

Accession

MI0013861

Description

Bombyx mori bmo-mir-3001 precursor miRNA

Literature search

1 open access papers mention bmo-mir-3001
(1 sentences)

Sequence

74791 reads, 1745.0 reads per million, 34 experiments

guaugugauucagaugcguuUAAGUUGAAAGAAUUGUAGAUUUUGAuuccguuuucgccaauaaaauucagcagaauugauaUUUUUCUUUUGUCUUUGGCGUcaucaaggccauuagc
............((((((((.(((..(((((((..((((((((((......(((........)))......)))))))..)))..)))))))..))).)))).))))............

Structure

guaugugauuca    -    U   UU       UU   --       Auuccg   ucg 
            gaug cguu AAG  GAAAGAA  GUA  GAUUUUG      uuu   c
            |||| |||| |||  |||||||  |||  |||||||      |||    
            cuac GCGG UUC  UUUUCUU  Uau  uuaagac      aaa   c
cgauuaccggaa    U    U   UG       UU   ag       gacuua   uaa 

Annotation confidence High

Genome context

dbj|BSVE01000020.1|: 4807393-4807511 [-]

Mature bmo-miR-3001-5p

• Accession: MIMAT0014665
• Description: Bombyx mori bmo-miR-3001-5p mature miRNA
• Sequence: 21 - UAAGUUGAAAGAAUUGUAGAUUUUGA - 46
• Evidence: experimental ; Illumina [1]

Mature bmo-miR-3001-3p

• Accession: MIMAT0053223
• Description: Bombyx mori bmo-miR-3001-3p mature miRNA
• Sequence: 83 - UUUUUCUUUUGUCUUUGGCGU - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20089182
   Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
   Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
   BMC Genomics (2010) 11:52