miRBase entry: hsv2-mir-H11

Stem-loop hsv2-mir-H11


Accession
MI0013898
Description
Herpes Simplex Virus 2 hsv2-mir-H11 precursor miRNA


Sequence

ucggcagggggcguggccgcccuucuaaaaaaagugagaacgcgAAGCGUUCGCACUUUGUCCUAauaauauauauacuaUUAGGACAAAGUGCGAACGCUUcgcguucucacuuuuuuuagaagggcggccacgcccccuuuga
((((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((..........)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure
    c                                                               auau 
ucgg agggggcguggccgcccuucuaaaaaaagugagaacgcgAAGCGUUCGCACUUUGUCCUAaua    a
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
aguu ucccccgcaccggcgggaagauuuuuuucacucuugcgcUUCGCAAGCGUGAAACAGGAUUau    u
    -                                                               caua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hsv2-miR-H11-5p

Accession MIMAT0014697
Description Herpes Simplex Virus 2 hsv2-miR-H11-5p mature miRNA
Sequence 45 - AAGCGUUCGCACUUUGUCCUA - 65
Evidence experimental
Illumina [1]

Mature hsv2-miR-H11-3p

Accession MIMAT0014698
Description Herpes Simplex Virus 2 hsv2-miR-H11-3p mature miRNA
Sequence 81 - UUAGGACAAAGUGCGAACGCUU - 102
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20181707
    Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2
    "Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM"
    "J Virol (2010) 84:4659-4672