Stem-loop api-let-7

Accession

MI0013908

Description

Acyrthosiphon pisum api-let-7 precursor miRNA

Literature search

13 open access papers mention api-let-7
(67 sentences)

Sequence

11519 reads, 1095.0 reads per million, 6 experiments

UGAGGUAGUUGGUUGUAUAGUaguuuauuauuugacuuuaCUAUACAAUCGGCUAACUUUACU
(((((((((((((((((((((((((........))))..))))))))))))))).))))))..

Structure

--      -               --    uau 
  UGAGGU AGUUGGUUGUAUAGU  aguu   u
  |||||| |||||||||||||||  ||||    
  AUUUCA UCGGCUAACAUAUCa  ucag   a
UC      A               uu    uuu 

Annotation confidence High

Genome context

GL350266.1: 136852-136914 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from api-let-7

Mature api-let-7-5p

• Accession: MIMAT0014709
• Description: Acyrthosiphon pisum api-let-7-5p mature miRNA
• Sequence: 1 - UGAGGUAGUUGGUUGUAUAGU - 21
• Evidence: experimental ; Illumina [1]

Mature api-let-7-3p

• Accession: MIMAT0057266
• Description: Acyrthosiphon pisum api-let-7-3p mature miRNA
• Sequence: 41 - CUAUACAAUCGGCUAACUUUACU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281