Stem-loop api-mir-1

Accession

MI0013909

Description

Acyrthosiphon pisum api-mir-1 precursor miRNA

Literature search

4 open access papers mention api-mir-1
(23 sentences)

Sequence

462831 reads, 14215.0 reads per million, 6 experiments

CCGUACUUCUUGUAUGUUCGCAUAgugugcgcgagccauuuggccgaauuuuacgacguaUGGAAUGUAAAGAAGUAUGGAG
(((((((((((.(((((((.(((((((((..((.(((....))))).....))).)).))))))))))))))))))))))..

Structure

--           G       G    -  -   ---cg  a   a 
  CCGUACUUCUU UAUGUUC CAUA gu gug     cg gcc u
  ||||||||||| ||||||| |||| || |||     || |||  
  GGUAUGAAGAA AUGUAAG GUau ca cau     gc cgg u
GA           -       -    g  g   uuuaa  -   u 

Annotation confidence High

Genome context

GL350503.1: 79303-79384 [+]

Mature api-miR-1-5p

• Accession: MIMAT0057267
• Description: Acyrthosiphon pisum api-miR-1-5p mature miRNA
• Sequence: 1 - CCGUACUUCUUGUAUGUUCGCAUA - 24
• Evidence: experimental ; Illumina [1]

Mature api-miR-1-3p

• Accession: MIMAT0014710
• Description: Acyrthosiphon pisum api-miR-1-3p mature miRNA
• Sequence: 61 - UGGAAUGUAAAGAAGUAUGGAG - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281