Stem-loop api-mir-124

Accession

MI0013911

Description

Acyrthosiphon pisum api-mir-124 precursor miRNA

Literature search

3 open access papers mention api-mir-124
(4 sentences)

Sequence

485 reads, 36.0 reads per million, 5 experiments

GCGUUCACUGUUGAGCCUAUAUGuuguuaauaugaaucaUAAGGCACGCGGUGAAUGCCA
(((((((((((.(.((((.((((..............)))))))).))))))))))))..

Structure

--           U A    A    uuguua 
  GCGUUCACUGU G GCCU UAUG      a
  ||||||||||| | |||| ||||       
  CGUAAGUGGCG C CGGA AUac      u
AC           - A    -    uaagua 

Annotation confidence High

Genome context

GL350151.1: 56406-56465 [-]

Mature api-miR-124-5p

• Accession: MIMAT0057269
• Description: Acyrthosiphon pisum api-miR-124-5p mature miRNA
• Sequence: 1 - GCGUUCACUGUUGAGCCUAUAUG - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-124-3p

• Accession: MIMAT0014712
• Description: Acyrthosiphon pisum api-miR-124-3p mature miRNA
• Sequence: 40 - UAAGGCACGCGGUGAAUGCCA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281