Stem-loop api-mir-13a

Accession

MI0013912

Description

Acyrthosiphon pisum api-mir-13a precursor miRNA

Literature search

4 open access papers mention api-mir-13a
(6 sentences)

Sequence

18591 reads, 521.0 reads per million, 5 experiments

cCGUCAAAAUGGAUGUGAAGUGguuuuuuuuacuauucaUAUCACAGCCACUUUGAUGAGC
.(((((((.(((.(((((((((((.......))))))....))))).))).)))))))...

Structure

--c       A   A     ----      uu 
   CGUCAAA UGG UGUGA    AGUGgu  u
   ||||||| ||| |||||    ||||||  u
   GUAGUUU ACC ACACU    uuauca  u
CGA       C   G     AUac      uu 

Annotation confidence High

Genome context

GL349742.1: 367742-367802 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from api-mir-13a

Mature api-miR-13a-5p

• Accession: MIMAT0057270
• Description: Acyrthosiphon pisum api-miR-13a-5p mature miRNA
• Sequence: 2 - CGUCAAAAUGGAUGUGAAGUG - 22
• Evidence: experimental ; Illumina [1]

Mature api-miR-13a-3p

• Accession: MIMAT0014713
• Description: Acyrthosiphon pisum api-miR-13a-3p mature miRNA
• Sequence: 40 - UAUCACAGCCACUUUGAUGAGC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281