Stem-loop api-mir-14

Accession

MI0013913

Description

Acyrthosiphon pisum api-mir-14 precursor miRNA

Literature search

3 open access papers mention api-mir-14
(5 sentences)

Sequence

219197 reads, 14496.0 reads per million, 6 experiments

auaaaucggaagggcaugcguCGGAGAGAGAUAACAGGCUUUGGCUuuuuauguauuuuauuagUCAGUCUUUUUCUCUCUCCUAUuuacccaccgaa
.....((((..(((..((.((.(((((((((.((.(((((..((((................))))))))))).))))))))).)).))))).)))).

Structure

auaaa    aa   ca  c  C         U  C     UU    uuuuaug 
     ucgg  ggg  ug gu GGAGAGAGA AA AGGCU  GGCU       u
     ||||  |||  || || ||||||||| || |||||  ||||        
     agcc  ccc  au UA CCUCUCUCU UU UCUGA  CUga       a
----a    -a   --  u  U         U  -     --    uuauuuu 

Annotation confidence High

Genome context

GL349777.1: 408822-408919 [-]

Mature api-miR-14-5p

• Accession: MIMAT0057271
• Description: Acyrthosiphon pisum api-miR-14-5p mature miRNA
• Sequence: 22 - CGGAGAGAGAUAACAGGCUUUGGCU - 46
• Evidence: experimental ; Illumina [1]

Mature api-miR-14-3p

• Accession: MIMAT0014714
• Description: Acyrthosiphon pisum api-miR-14-3p mature miRNA
• Sequence: 65 - UCAGUCUUUUUCUCUCUCCUAU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281